| PI.c | This is the source code of our program. |
| probability.cfg | This the probability of characteristic ions and noise. |
| Trypsin.cfg | Enzymatic site of trypsin |
| Mix.protein.db | protein database of for seaching, human proteins (false) together with the mixture proteins(ture). |
| Mix_data.tar.gz | MS/MS data of the mixture. |
| Mix.PI.assignment | positive assignments generated by PI for the mixture. |
| Mix.SEQUEST.assignment | positive assignments generated by SEQUEST for the mixture. |
| Mix.PI+SEQ-.manual-examining | assignments found by PI but not found by SEQUEST. These assignments have been manaully examined. |
| OPD_08.protein.db | protein database of for seaching, predicted proteins from Mycobacterium_smegmatis together with the corrected peptide set. |
| OPD_08.PI.out.original | original assignments by PI. |
| OPD_08.PI.assignment | positive assignments by PI. |
| OPD_08.PI+SEQ-.full.list | the full list of assignments found by PI but not by SEQUEST. |
| OPD_08.PI+SEQ-.test.list | the list of assignments which has gone examination. |
| OPD_08.PI+SEQ-.manual-examining | assignments found by PI but not found by SEQUEST. These assignments have been manaully examined. |
| OPD_08.result.summary | summary of PI performance over the OPD_08. |
| PIv1.0.zip | preliminary version of software PI |